SPIMcodeKG08/ 0000755 0000765 0000024 00000000000 11035332245 013271 5 ustar mankg staff 0000000 0000000 SPIMcodeKG08/.DS_Store 0000644 0000765 0000024 00000014004 11034160767 014762 0 ustar mankg staff 0000000 0000000 Bud1 u r e s o P i c t u r e s o f M o d e licgoblob @ @ @ @ E DSDB ` @ @ @ SPIMcodeKG08/AntiViral Silencing Model.spi 0000755 0000765 0000024 00000002153 11031621666 020624 0 ustar mankg staff 0000000 0000000 directive sample 3.0 1000 (*directive plot P();M();Dp();Dm();RdRP();Sip();Rf();Rp();V()*) directive plot P();V();Sip() val d=1.0 val dr=1.0 val dsi=1.0 val p=1.0 val m=2.0 val d1=100.0 val a=1.0 new P1@p:chan new M1@m:chan new D1@d1:chan new A@a:chan val r=10.0 val v=1.0 val Gs=1.0 val Gd=1.0 let pt1()=delay@400.0;(pt1()|10 of P()) and P()= do delay @r;RdRP() or delay@v;V() or ?P1;Dp() or delay@Gs;Sip() or delay@0.2;() and pt2()=delay@100.0;(pt2()|RdRP()) and RdRP()= !M1;!P1;delay@d;() and pt3()=delay@12.0;(pt3()|V()) and V()=delay@2.0;() and pt4()=delay@500.0;(pt4()|Dp()) and Dp()= do delay@a;RdRP() or delay@a;P() or delay@a;M() or delay@d;() or delay@Gd;Sip() and pt5()=delay@50.0;(pt5()|M()) and M()= do ?M1;Dm() or delay@d;() and pt6()=delay@100.0;(pt6()|Dm()) and Dm()= do delay@Gd;Sip() or delay@d;() or delay@1.0;M() and Sip()= do delay@5.0;() or !D1;() and pt7()=delay@100.0;(pt7()|Rf()) and Rf()=do delay@dr;() or ?D1;Rp() and Rp()= delay@a;() run (pt1()|pt2()|pt3()|pt4()|pt5()|pt6()|pt7()|1000 of P()| 10 of V()) SPIMcodeKG08/Basic Model.spi 0000755 0000765 0000024 00000000633 10777031376 016072 0 ustar mankg staff 0000000 0000000 directive sample 3.0 1000 directive plot R() val da= 50.0 val dr=0.1 val dm=1.0 val dc=1.0 val h=1000.0 new b@0.001:chan let pt()=delay@h;(M()|pt()) and pt1()=delay@500.0;(pt1()|D()) and M()= do !b;C() or delay@1.0;() and D()= do delay@50;R() or delay@10.0 and R()= do ?b;C() or delay@0.1;() and C()= do delay@1.0;D() or delay@1.0;() run(pt()| pt1()| 1000 of M() | 10 of D()) SPIMcodeKG08/Checking Bidirectional in 5 Segments.spi 0000755 0000765 0000024 00000002441 11000541714 022533 0 ustar mankg staff 0000000 0000000 directive sample 3.0 1000 directive plot r5();c5();d5();m() val a=10.0 val dr=0.1 val dm=1.0 val dc=1.0 val h=1000.0 val g =1.0 new b@0.001:chan let d1()= do delay@a;r5() or delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r1()=do ?b;c1() or delay@dr;() and c1()=do delay@g;d1() or delay@dc;() and pt1()=delay@30.0;(pt1()|d2()) and d2()= do delay@a;r5() or delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r2()=do ?b;c2() or delay@dr;() and c2()=do delay@g;d2() or delay@dc;() and pt2()=delay@70.0;(pt2()|d3()) and d3()= do delay@a;r5() or delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r3()=do ?b;c3() or delay@dr;() and c3()=do delay@g;d3() or delay@dc;() and pt3()= delay@80.0;(pt3()|d4()) and d4()= do delay@a;r5() or delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r4()=do ?b;c4() or delay@dr;() and c4()=do delay@g;d4() or delay@dc;() and pt4()=delay@90.0;(pt4()|d5()) and d5()= do delay@a;r5() or delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r5()=do ?b;c5() or delay@dr;() and c5()=do delay@g;d5() or delay@dc;() and ptm()=delay@h;(ptm()|m()) and m()=delay@dm;!b;() run (pt1()|pt2()|pt3()|ptm()|pt4()|1000 of m()|100 of d5()) SPIMcodeKG08/Checking Competetion in 5 Segments.spi 0000755 0000765 0000024 00000002276 11000205162 022251 0 ustar mankg staff 0000000 0000000 directive sample 3.0 1000 directive plot r5();c5();d5();m() val a1=10.0 val a2=9.0 val a3=8.0 val a4=6.0 val a5=4.0 val dr=0.1 val dm=1.0 val dc=1.0 val h=1000.0 val g =1.0 new b@0.001:chan let d1()=delay@a1;r1() and r1()=do ?b;c1() or delay@dr;() and c1()=do delay@g;d1() or delay@dc;() and pt1()=delay@30.0;(pt1()|d2()) and d2()= do delay@a2;r2() or delay@a2;r1() and r2()=do ?b;c2() or delay@dr;() and c2()=do delay@g;d2() or delay@dc;() and pt2()=delay@70.0;(pt2()|d3()) and d3()= do delay@a2;r2() or delay@a1;r1() or delay@a3;r3() and r3()=do ?b;c3() or delay@dr;() and c3()=do delay@g;d3() or delay@dc;() and pt3()= delay@80.0;(pt3()|d4()) and d4()= do delay@a4;r4() or delay@a2;r2() or delay@a1;r1() or delay@a3;r3() and r4()=do ?b;c4() or delay@dr;() and c4()=do delay@g;d4() or delay@dc;() and pt4()=delay@90.0;(pt4()|d5()) and d5()= do delay@a5;r5() or delay@a4;r4() or delay@a2;r2() or delay@a1;r1() or delay@a3;r3() and r5()=do ?b;c5() or delay@dr;() and c5()=do delay@g;d5() or delay@dc;() and ptm()=delay@h;(ptm()|m()) and m()=delay@dm;!b;() run (pt1()|pt2()|pt3()|ptm()|pt4()|1000 of m()|100 of d5()) SPIMcodeKG08/Continous Si-RNA Transfection on HIV-1.spi 0000755 0000765 0000024 00000002261 11033635076 022535 0 ustar mankg staff 0000000 0000000 directive sample 3.0 100 directive plot newHIV() val k=1.0 val o=1.0 val b1=1.0 val m=0.3 val n=0.3 val z=1.0 val d=1.0 val q=10.0 new Q@q:chan val m1=10.0 val a=10.0 val b=10.0 val c=10.0 new M1@m1:chan new A@a:chan new B@b:chan new C1@c:chan let pt1()=delay@100.0;(pt1()|HIV()) and ptc()=delay@100.0;(ptc()|sicd4()) and ptc1()=delay@100.0;(ptc()|presi()) and ptc2()=delay@100.0;(ptc()|p24sirna()) and ptc3()=delay@100.0;(ptc()|viralsi()) and sicd4()=!A;() and presi()=!B;() and p24sirna()=!C1;() and viralsi()=!M1;() and C()=() and HIV()= do delay@k;P() or delay@d;() or !Q;() and pt2()=delay@100.0;(pt2()|T()) and T()=do ?Q;I() or ?A;C() or delay@d;() and I()=delay@d;() and P()=do delay@o;V() or ?B;C() and V()=do delay@b1;PV() or ?C1;() and PV()= do delay@m;Nef() or delay@m;Rev() or delay@m;Gag() and Nef()=do delay@n;VP() or ?M1;C() and Rev()=do delay@n;VP() or ?M1;C() and Gag()=do delay@n;VP() or ?M1;C() and VP()=do delay@z;newHIV() or ?C;C() and newHIV()=() run(10 of HIV()|ptc()|ptc()|ptc1()|ptc2()|ptc3()| 100 of T()|100 of sicd4()| 100 of presi()| 100 of p24sirna()|100 of viralsi()|pt1()|pt2()) SPIMcodeKG08/HIV Replication without Transfection.spi 0000755 0000765 0000024 00000001177 11033615220 022776 0 ustar mankg staff 0000000 0000000 directive sample 3.0 100 directive plot I();newHIV() val k=1.0 val o=1.0 val b=1.0 val m=0.3 val n=0.3 val z=1.0 val d=1.0 val q=10.0 new Q@q:chan let pt1()=delay@100.0;(pt1()|HIV()) and HIV()= do delay@k;P() or delay@d;() or !Q;() and pt2()=delay@100.0;(pt2()|T()) and T()=do ?Q;I() or delay@d;() and I()=delay@d;() and P()=delay@o;V() and V()=delay@b;PV() and PV()= do delay@m;Nef() or delay@m;Rev() or delay@m;Gag() and Nef()=delay@n;VP() and Rev()=delay@n;VP() and Gag()=delay@n;VP() and VP()=delay@z;newHIV() and newHIV()=() run(10 of HIV()| 100 of T()|pt1()|pt2()) SPIMcodeKG08/New RNA Silencing Model for 10 Segments.spi 0000755 0000765 0000024 00000004732 10777705254 022624 0 ustar mankg staff 0000000 0000000 directive sample 3.0 1000 directive plot r10();c10();d10();m() val a=10.0 val dr=0.1 val dm=1.0 val dc=1.0 val h=1000.0 val g =1.0 new b@0.001:chan let d1()=delay@a;r1() and r1()=do ?b;c1() or delay@dr;() and c1()=do delay@g;d1() or delay@dc;() and pt1()=delay@30.0;(pt1()|d2()) and d2()= do delay@a;r2() or delay@a;r1() and r2()=do ?b;c2() or delay@dr;() and c2()=do delay@g;d2() or delay@dc;() and pt2()=delay@70.0;(pt2()|d3()) and d3()= do delay@a;r2() or delay@a;r1() or delay@a;r3() and r3()=do ?b;c3() or delay@dr;() and c3()=do delay@g;d3() or delay@dc;() and pt3()= delay@80.0;(pt3()|d4()) and d4()= do delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r4()=do ?b;c4() or delay@dr;() and c4()=do delay@g;d4() or delay@dc;() and pt4()=delay@90.0;(pt4()|d5()) and d5()= do delay@a;r5() or delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r5()=do ?b;c5() or delay@dr;() and c5()=do delay@g;d5() or delay@dc;() and pt5()=delay@110.0;(pt5()|d6()) and d6()= do delay@a;r6() or delay@a;r5() or delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r6()=do ?b;c6() or delay@dr;() and c6()=do delay@g;d6() or delay@dc;() and pt6()=delay@130.0;(pt6()|d7()) and d7()= do delay@a;r7() or delay@a;r6() or delay@a;r5() or delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r7()=do ?b;c7() or delay@dr;() and c7()=do delay@g;d7() or delay@dc;() and pt7()=delay@150.0;(pt7()|d8()) and d8()= do delay@a;r8() or delay@a;r7() or delay@a;r8() or delay@a;r6() or delay@a;r5() or delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r8()=do ?b;c8() or delay@dr;() and c8()=do delay@g;d8() or delay@dc;() and pt8()=delay@160.0;(pt8()|d9()) and d9()=do delay@a;r9()or delay@a;r8() or delay@a;r7() or delay@a;r6() or delay@a;r5() or delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r9()=do ?b;c9() or delay@dr;() and c9()=do delay@g;d9() or delay@dc;() and pt9()=delay@180.0;(pt9()|d10()) and d10()=do delay@a;r10() or delay@a;r9()or delay@a;r8() or delay@a;r7() or delay@a;r6() or delay@a;r5() or delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r10()=do ?b;c10() or delay@dr;() and c10()=do delay@g;d10() or delay@dc;() and ptm()=delay@h;(ptm()|m()) and m()=delay@dm;!b;() run (pt1()|pt2()|pt3()|ptm()|pt4()|pt5()|pt6()|pt7()|pt8()|pt9()|1000 of m()|100 of d10()) SPIMcodeKG08/New RNA Silencing Model for 2 Segments.spi 0000755 0000765 0000024 00000001026 10777546640 022540 0 ustar mankg staff 0000000 0000000 directive sample 10.0 1000 directive plot c2();d2();r2();m() val a=10.0 val dr=0.1 val dm=1.0 val dc=1.0 val h=1000.0 val g =1.0 new b@0.001:chan let d1()=delay@a;r1() and r1()=do ?b;c1() or delay@dr;() and c1()=do delay@g;d1() or delay@dc;() and pt1()=delay@50.0;(pt1()|d2()) and d2()= do delay@a;r2() or delay@a;r1() and r2()=do ?b;c2() or delay@dr;() and c2()=do delay@g;d2() or delay@dc;() and ptm()=delay@h;(ptm()|m()) and m()=delay@dm;!b;() run (pt1()|ptm()|1000 of m()|10 of d2()) SPIMcodeKG08/New RNA Silencing Model for 4 Segments.spi 0000755 0000765 0000024 00000001634 10777677214 022551 0 ustar mankg staff 0000000 0000000 directive sample 5.0 10000 directive plot r4();c4();d4();m() val a=10.0 val dr=0.1 val dm=1.0 val dc=1.0 val h=1000.0 val g =1.0 new b@0.001:chan let d1()=delay@a;r1() and r1()=do ?b;c1() or delay@dr;() and c1()=do delay@g;d1() or delay@dc;() and pt1()=delay@30.0;(pt1()|d2()) and d2()= do delay@a;r2() or delay@a;r1() and r2()=do ?b;c2() or delay@dr;() and c2()=do delay@g;d2() or delay@dc;() and pt2()=delay@70.0;(pt2()|d3()) and d3()= do delay@a;r2() or delay@a;r1() or delay@a;r3() and r3()=do ?b;c3() or delay@dr;() and c3()=do delay@g;d3() or delay@dc;() and pt3()= delay@100.0;(pt3()|d4()) and d4()= do delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r4()=do ?b;c4() or delay@dr;() and c4()=do delay@g;d4() or delay@dc;() and ptm()=delay@h;(ptm()|m()) and m()=delay@dm;!b;() run (pt1()|pt2()|pt3()|ptm()|1000 of m()|10 of d4()) SPIMcodeKG08/New RNA Silencing Model for 5 Segments.spi 0000755 0000765 0000024 00000002176 10777701664 022551 0 ustar mankg staff 0000000 0000000 directive sample 3.0 1000 directive plot r5();c5();d5();m() val a=10.0 val dr=0.1 val dm=1.0 val dc=1.0 val h=1000.0 val g =1.0 new b@0.001:chan let d1()=delay@a;r1() and r1()=do ?b;c1() or delay@dr;() and c1()=do delay@g;d1() or delay@dc;() and pt1()=delay@30.0;(pt1()|d2()) and d2()= do delay@a;r2() or delay@a;r1() and r2()=do ?b;c2() or delay@dr;() and c2()=do delay@g;d2() or delay@dc;() and pt2()=delay@70.0;(pt2()|d3()) and d3()= do delay@a;r2() or delay@a;r1() or delay@a;r3() and r3()=do ?b;c3() or delay@dr;() and c3()=do delay@g;d3() or delay@dc;() and pt3()= delay@80.0;(pt3()|d4()) and d4()= do delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r4()=do ?b;c4() or delay@dr;() and c4()=do delay@g;d4() or delay@dc;() and pt4()=delay@90.0;(pt4()|d5()) and d5()= do delay@a;r5() or delay@a;r4() or delay@a;r2() or delay@a;r1() or delay@a;r3() and r5()=do ?b;c5() or delay@dr;() and c5()=do delay@g;d5() or delay@dc;() and ptm()=delay@h;(ptm()|m()) and m()=delay@dm;!b;() run (pt1()|pt2()|pt3()|ptm()|pt4()|1000 of m()|100 of d5()) SPIMcodeKG08/Pictures of Model/ 0000755 0000765 0000024 00000000000 11034157547 016506 5 ustar mankg staff 0000000 0000000 SPIMcodeKG08/Pictures of Model/finalbasicmodel.jpg 0000755 0000765 0000024 00000430020 11003650032 022305 0 ustar mankg staff 0000000 0000000 JFIF H H Exif MM * b j( 1 r2 i Adobe Photoshop 7.0 2008:04:23 11:04:56 ( & H H JFIF H H Adobe_CM Adobe d U " ? 3 !1AQa"q2B#$Rb34rC%Scs5&DTdE£t6UeuF'Vfv7GWgw 5 !1AQaq"2B#R3$brCScs4%&5DTdEU6teuFVfv'7GWgw ? TǤmHp%)%[?f)7ݍkK=,{:eu3C;Yw5Snިnq~+-ݱ تu~;}Yk=Ĕٶ]rqEŇnM*!Q.gt