IT 470 -
Resources
Please check this page quite frequently for updated resources.
Suggested Books
There is no specific text book but the following books will be helpful. Specially the book by Pevzner. We will provide many additional material such as videos, handouts etc during the course. You do not have to purchase any book.
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Pavel A. Pevzner, Computational Molecular Biology, An Algorithmic Approach,
The MIT press, 2001
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Neil C. Jones and Pavel A. Pevzner, An Introduction to Bioinformatics
Algorithms, Indian reprint by Ane Books, 2005
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Nello Cristianini and Matthew W. Hahn, Introduction to Computational
Genomics: A Case Studies Approach, 2007, Cambridge University Press
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David Mount, Bioinformatics: Sequence and Genome Analysis, CSHL Press, 2004
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Dan Gusfield, Algorithms on Strings, Trees and Sequences, CUP, 1997
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Helen C. Causton, John Quackenbush and Alvis Brazma, Microarray Gene
Expression Data Analysis:A Beginner's Guide, Blackwell Publishing, 2003
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Scott Markel and Darryl Leon, Sequence Analysis in a Nutshell: A Guide to
Common Tools and Databases, O'Reilly, 2003
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R. Durbin, S. Eddy, A. Krogh and G. Mitchison, Biological Sequence Analysis,
1998, CUP
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Philip E. Bourne and Helge Weissig, Structural Bioinformatics, John Wiley
& Sons, 2003
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Hiroaki Kitano, Foundations of Systems Biology, The MIT Press, 2001
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Uri Alon and Alon Alon, An Introduction to Systems Biology:Design Principles
of Biological Circuits, Taylor & Francis, July 2006
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Peter Parham, The Immune System, Garland Science, 2004
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Darren J Wilkinson, Stochastic Modelling for Systems Biology, Chapman &
Hall/CRC, April 2006
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Bernhard O. Palsson, Systems Biology, Cambridge University Press, January
2006
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Michal Gerhard, Biochemical Pathways: An Atlas of Biochemistry and Molecular
Biology, Wiley-Spektrum, 1998
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Dominik Wodarz and Natalia Komarova,
Computational Biology of Cancer, World Scientific, Jan 2005
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Eric H. Davidson, The Regulatory Genome: Gene
Regulatory Networks in Development and Evoluation, Academic Press,
2006
Suggested Online Material:
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Luca Cardelli, Artificial Biochemistry Course, Microsoft Research, May 2006
(see http://lucacardelli.name/ArtificialBiochemistry.htm )
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Ron Shamir, Algorithms in Molecular Biology, Course Archive,
http://www.cs.tau.ac.il/~rshamir/algmb.html
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T. A. Brown, Genome (online book)
http://www.ncbi.nlm.nih.gov/books/bv.fcgi?call=bv.View..ShowTOC&rid=genomes.TOC&depth=2
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http://www.genome.gov/25019879 (Understanding the Human Genome project video)
Additional Material:
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http://www.nature.com/focus/systemsbiologyuserguide/index.html
(Nature's Sys Bio focus)
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http://en.wikipedia.org/wiki/Systems_biology
(Sys Bio wiki)
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http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Books (NCBI online book
shelf)
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http://www.web-books.com/MoBio/ (Molecular Biology Web Book)
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http://www.nslij-genetics.org/bioinfotraining/ (A list of courses on bioinformatics)